Supplementary Table 4. List of the 100 protein sequences selected randomly from the Swiss-Prot
database (http://www.expasy.org/sprot/). These proteins are unlikely to interact with DNA or RNA.
|
Swiss-Prot ID |
Functional annotation |
|
ANSP_ECOLI |
L-asparagine permease (L-asparagine transport protein) |
|
APE1_SCHPO |
Aminopeptidase I (EC 3.4.11.-) |
|
APGM_THEAC |
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) |
|
APOH_BOVIN |
Beta-2-glycoprotein I precursor (Apolipoprotein H) |
|
ARGI_STAAM |
Arginase (EC 3.5.3.1) |
|
ATKA_HALSA |
Potassium-transporting ATPase A chain (EC 3.6.3.12) |
|
CADH_MAIZE |
Cinnamyl-alcohol dehydrogenase (EC 1.1.1.195) (CAD) |
|
CAHZ_BRARE |
Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase) |
|
CAID_SALTI |
Carnitinyl-CoA dehydratase (EC 4.2.1.-) (Crotonobetainyl-CoA hydratase) |
|
CCPR_YEAST |
Cytochrome c peroxidase, mitochondrial precursor (EC 1.11.1.5) (CCP) |
|
CCR10_HUMAN |
C-C chemokine receptor type 10 (C-C CKR-10) (CCR-10) (G-protein coupled receptor 2) |
|
CD2A1_MOUSE |
Cyclin-dependent kinase inhibitor 2A (Cyclin-dependent kinase 4 inhibitor A) (CDK4I) |
|
CDO_SCHJA |
Cysteine dioxygenase (EC 1.13.11.20) (CDO) |
|
CDPK1_ARATH |
Calcium-dependent protein kinase, isoform AK1 (EC 2.7.1.-) (CDPK) |
|
CDR_STAAM |
Coenzyme A disulfide reductase (EC 1.8.1.14) (CoA-disulfide reductase) (CoADR) |
|
CDSA_RICPR |
Phosphatidate cytidylyltransferase (EC 2.7.7.41) (CDP-diglyceride synthetase) |
|
CEMA_ORYSA |
Chloroplast envelope membrane protein |
|
CESA8_ARATH |
Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC 2.4.1.12) (AtCesA-8) |
|
CFTR_HUMAN |
Cystic fibrosis transmembrane conductance regulator (cAMP-dependent chloride channel) |
|
CH3L1_PIG |
Chitinase-3-like protein 1 precursor (38 kDa heparin-binding glycoprotein) |
|
CHIC_SECCE |
Basic endochitinase C precursor (EC 3.2.1.14) (Rye seed chitinase-c) (RSC-c) |
|
CHLB_CHLMO |
Light-independent protochlorophyllide reductase subunit B (EC 1.18.-.-) |
|
CHLE_HUMAN |
Cholinesterase precursor (EC 3.1.1.8) (Acylcholine acylhydrolase) |
|
CHLN_ADICA |
Light-independent protochlorophyllide reductase subunit N (EC 1.18.-.-) |
|
CHOMT_MEDSA |
Isoliquiritigenin 2'-O-methyltransferase (EC 2.1.1.-) (Chalcone O-methyltransferase) |
|
CHS2_SOYBN |
Chalcone synthase 2 (EC 2.3.1.74) (Naringenin-chalcone synthase 2) |
|
CHSS2_MOUSE |
Chondroitin sulfate synthase 2 (EC 2.4.1.175) |
|
CIMA_METAC |
(R)-citramalate synthase (EC 2.3.3.-) |
|
CISY3_YEAST |
Citrate synthase 3 (EC 2.3.3.1) |
|
CITN_SALPU |
Citrate-sodium symport (Citrate transporter) (Citrate carrier protein) |
|
CLAT_MOUSE |
Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase) (Choline acetylase) (ChAT) |
|
CLCA_RHOOP |
Chlorocatechol 1,2-dioxygenase (EC 1.13.11.-) |
|
CLCB_RAT |
Clathrin light chain B (Lcb) |
|
CLCKA_RAT |
Chloride channel protein ClC-Ka (Chloride channel Ka) (ClC-K1) |
|
CLIC6_RABIT |
Chloride intracellular channel 6 (Parchorin) |
|
CLPP1_CHLPN |
ATP-dependent Clp protease proteolytic subunit 1 (EC 3.4.21.92) (Endopeptidase Clp 1) |
|
CLS_BACPF |
Cardiolipin synthetase (EC 2.7.8.-) (Cardiolipin synthase) (CL synthase) |
|
COX1_PONPA |
Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide I) |
|
COX3_FELCA |
Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide III) |
|
CP17A_HUMAN |
Cytochrome P450 17A1 (EC 1.14.99.9) (CYPXVII) (Steroid 17-alpha-monooxygenase) |
|
CP2B4_RABIT |
Cytochrome P450 2B4 (EC 1.14.14.1) (CYPIIB4) |
|
CYB_ANTNA |
Cytochrome b |
|
DAPB_CAMJE |
Dihydrodipicolinate reductase (EC 1.3.1.26) (DHPR) |
|
DGTP_PSEAE |
Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1) (dGTPase) |
|
FABD_BACSU |
Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) (MCT) |
|
FAD3E_ARATH |
Omega-3 fatty acid desaturase, endoplasmic reticulum (EC 1.14.19.-) |
|
FADL_SALTY |
Long-chain fatty acid transport protein precursor (Outer membrane fadL protein) |
|
FANCL_HUMAN |
Ubiquitin ligase protein FANCL (EC 6.3.2.-) (Fanconi anemia group L protein) |
|
G6PI_RHIME |
Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI) (Phosphoglucose isomerase) |
|
GBB5_PONPY |
Guanine nucleotide-binding protein beta subunit 5 (Transducin beta chain 5) (Gbeta5) |
|
GBRR3_RAT |
Gamma-aminobutyric-acid receptor rho-3 subunit precursor (GABA(A) receptor) |
|
GLB3_CHITH |
Globin CTT-III precursor (Erythrocruorin III) |
|
GLGA1_BRAJA |
Glycogen synthase 1 (EC 2.4.1.21) (Starch [bacterial glycogen] synthase 1) |
|
GLGB_BURPS |
1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen branching enzyme) |
|
GNAQ_XENLA |
Guanine nucleotide-binding protein G(q), alpha subunit |
|
HEM6_MOUSE |
Coproporphyrinogen III oxidase, mitochondrial precursor (EC 1.3.3.3) |
|
HIS7_BIFLO |
Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (IGPD) |
|
IDH3G_RAT |
Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial precursor (EC 1.1.1.41) |
|
KAD_THENE |
Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase) |
|
KHSE_PHOLL |
Homoserine kinase (EC 2.7.1.39) (HSK) (HK) |
|
LCAP_HUMAN |
Leucyl-cystinyl aminopeptidase (EC 3.4.11.3) (Cystinyl aminopeptidase) (Oxytocinase) |
|
MCRB_METVA |
Methyl-coenzyme M reductase beta subunit (EC 2.8.4.1) |
|
MDH_SILPO |
Malate dehydrogenase (EC 1.1.1.37) |
|
MLE1_MUGCA |
Myosin light chain 1, skeletal muscle isoform (A1 catalytic) (Alkali) (LC-1) (LC1) |
|
MMP26_HUMAN |
Matrix metalloproteinase-26 precursor (EC 3.4.24.-) (MMP-26) (Matrilysin-2) (Endometase) |
|
MSBA_PASMU |
Lipid A export ATP-binding/permease protein msbA |
|
NU1M_BRAVA |
NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH dehydrogenase subunit 1) |
|
NUOG_BUCBP |
NADH-quinone oxidoreductase chain G (EC 1.6.99.5) (NADH dehydrogenase I, chain G) |
|
PDXT_CORDI |
Glutamine amidotransferase subunit pdxT (EC 2.6.-.-) |
|
PELA_EMENI |
Pectate lyase precursor (EC 4.2.2.2) |
|
PHAE_RHIME |
K(+)/H(+) antiporter subunit E (pH adaptation potassium efflux system protein E) |
|
PHEB1_SYNPY |
C-phycoerythrin class I beta chain |
|
PHNC_STAAM |
Phosphonates import ATP-binding protein phnC (EC 3.6.3.28) |
|
PHOR_BACSU |
Alkaline phosphatase synthesis sensor protein phoR (EC 2.7.3.-) |
|
PP4C_RABIT |
Serine/threonine protein phosphatase 4 catalytic subunit (EC 3.1.3.16) (PP4C) |
|
PTRB_ECOLI |
Protease II (EC 3.4.21.83) (Oligopeptidase B) |
|
PYRE_BORBR |
Orotate phosphoribosyltransferase (EC 2.4.2.10) (OPRT) (OPRTase) |
|
RAG1_KLULA |
Low-affinity glucose transporter (Hexose transporter 1) |
|
RAM2_YEAST |
Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit (EC 2.5.1.58) |
|
SHARK_DROME |
Tyrosine-protein kinase shark (EC 2.7.1.112) |
|
SIA4A_HUMAN |
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase (EC 2.4.99.4) |
|
SIAH2_XENLA |
Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia homolog 2) (Xsiah-2) |
|
SID1_USTMA |
L-ornithine 5-monooxygenase (EC 1.13.12.-) (L-ornithine N5-oxygenase) |
|
SILE_SALTY |
Silver-binding protein silE precursor |
|
SL9A6_HUMAN |
Sodium/hydrogen exchanger 6 (Na(+)/H(+) exchanger 6) (NHE-6) |
|
SMTA_ASTBI |
Selenocysteine methyltransferase (EC 2.1.1.-) (SECYS-methyltransferase) (SECYS-MT) |
|
SNAT_SHEEP |
Serotonin N-acetyltransferase (EC 2.3.1.87) (Aralkylamine N-acetyltransferase) (AA-NAT) |
|
SRPG_SYNP7 |
Cysteine synthase, plasmid (EC 2.5.1.47) (O-acetylserine sulfhydrylase) |
|
THIO_TREPA |
Thioredoxin (TRX) |
|
THIP_ECOLI |
Thiamine transport system permease protein thiP |
|
THRC_PSEAE |
Threonine synthase (EC 4.2.3.1) |
|
THTR_AZOVI |
Thiosulfate sulfurtransferase (EC 2.8.1.1) (Rhodanese-like protein) |
|
THYX_STRCO |
Thymidylate synthase thyX (EC 2.1.1.148) (TS) (TSase) |
|
TRN2_DATST |
Tropinone reductase-II (EC 1.1.1.236) (TR-II) |
|
UFOG5_MANES |
Flavonol 3-O-glucosyltransferase 5 (EC 2.4.1.91) |
|
URE1_STRSL |
Urease alpha subunit (EC 3.5.1.5) (Urea amidohydrolase) |
|
VHT1_YEAST |
Vitamin H transporter (H+/biotin symporter) |
|
XYNA_PRERU |
Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) (Xylanase A) |
|
YDIS_ECOLI |
Electron transfer flavoprotein-quinone oxidoreductase ydiS (EC 1.5.5.-) |
|
ZUPT_STRMU |
Zinc transporter zupT |