Supplementary Table 2.  List of the 107 protein sequences in the PRINR25 dataset for prediction of

 RNA-binding residues.

PDB ID chain

Structure resolution (Å)

Sequence annotation

1A1V_A

2.20

Hepatitis C virus Ns3 helicase

1A34_A

1.81

Satellite tobacco mosaic virus protein

1A9N_A

2.38

Human U2 A'

1APG_A

3.00

Ricin from Ricinus communis

1AQ3_A

2.80

Bacteriophage ms2 coat protein

1ASY_A

3.00

Aspartyl tRNA synthetase from Saccharomyces cerevisiae

1BMV_2

3.00

Bean pod mottle virus protein

1C0A_A

2.40

E. coli aspartyl tRNA synthetase

1C9S_L

1.90

Trp RNA-binding attenuation protein from Bacillus stearothermophilus

1CVJ_A

2.60

Human polyadenylate binding protein 1

1CWP_A

3.20

Cowpea chlorotic mottle virus coat protein

1DDL_A

2.70

Desmodium yellow mottle virus protein

1DFU_P

1.80

E. coli ribosomal protein L25

1DI2_A

1.90

Xenopus laevis double stranded RNA binding protein A

1E7K_A

2.90

Human 15.5 KDa RNA binding protein (Nhp2/Rs6 family)

1E8O_A

3.20

Human signal recognition particle 9 Kda protein

1E8O_B

3.20

Human signal recognition particle 14 Kda protein

1EC6_A

2.40

Human RNA-binding protein Nova-2

1F8V_E

3.00

Pariacoto virus mature capsid protein

1FFY_A

2.20

Isoleucyl-tRNA synthetase from Staphylococcus aureus

1FKA_O

3.30

30S ribosomal protein S15 from Thermotoga maritima

1G59_A

2.40

Glutamyl-tRNA synthetase from Thermus thermophilus

1GAX_A

2.90

Valyl-tRNA synthetase from Thermus thermophilus

1H38_A

2.90

Bacteriophage T7 RNA polymerase

1HC8_A

2.80

Ribosomal protein L11 from Bacillus stearothermophilus

1HQ1_A

1.52

E. coli signal recognition particle protein

1I5L_A

2.75

SNRNP Sm-like protein Af-Sm1 from Archaeoglobus fulgidus

1I6U_A

2.60

30S ribosomal protein S8P from Methanococcus jannaschii

1JBR_A

2.15

Restrictocin (ribonuclease) from Aspergillus restrictus

1JID_A

1.80

Human signal recognition particle 19 Kda protein

1JJ2_1

2.40

50S ribosomal protein L39E from Haloarcula marismortui

1JJ2_2

2.40

50S ribosomal protein L44E from Haloarcula marismortui

1JJ2_A

2.40

50S ribosomal protein L2 from Haloarcula marismortui

1JJ2_B

2.40

50S ribosomal protein L3 from Haloarcula marismortui

1JJ2_C

2.40

50S ribosomal protein L4 from Haloarcula marismortui

1JJ2_D

2.40

50S ribosomal protein L5 from Haloarcula marismortui

1JJ2_E

2.40

50S ribosomal protein L6 from Haloarcula marismortui

1JJ2_G

2.40

50S ribosomal protein L10 from Haloarcula marismortui

1JJ2_I

2.40

50S ribosomal protein L13 from Haloarcula marismortui

1JJ2_J

2.40

50S ribosomal protein L14 from Haloarcula marismortui

1JJ2_K

2.40

50S ribosomal protein L15 from Haloarcula marismortui

1JJ2_L

2.40

50S ribosomal protein L15E from Haloarcula marismortui

1JJ2_M

2.40

50S ribosomal protein L18 from Haloarcula marismortui

1JJ2_N

2.40

50S ribosomal protein L18E from Haloarcula marismortui

1JJ2_O

2.40

50S ribosomal protein L19E from Haloarcula marismortui

1JJ2_P

2.40

50S ribosomal protein L21E from Haloarcula marismortui

1JJ2_Q

2.40

50S ribosomal protein L22 from Haloarcula marismortui

1JJ2_R

2.40

50S ribosomal protein L23 from Haloarcula marismortui

1JJ2_S

2.40

50S ribosomal protein L24 from Haloarcula marismortui

1JJ2_T

2.40

50S ribosomal protein L24E from Haloarcula marismortui

1JJ2_U

2.40

50S ribosomal protein L29 from Haloarcula marismortui

1JJ2_V

2.40

50S ribosomal protein L30 from Haloarcula marismortui

1JJ2_W

2.40

50S ribosomal protein L31E from Haloarcula marismortui

1JJ2_X

2.40

50S ribosomal protein L32E from Haloarcula marismortui

1JJ2_Y

2.40

50S ribosomal protein L37Ae from Haloarcula marismortui

1JJ2_Z

2.40

50S ribosomal protein L37E from Haloarcula marismortui

1K8W_A

1.85

E. coli tRNA pseudouridine synthase B

1KNZ_A

2.45

Simian 11 rotavirus nonstructural RNA-binding protein 34

1KOG_A

3.50

E. coli threonyl-tRNA synthetase

1L9A_A

2.90

Signal recognition particle 19 KDa protein from Methanococcus jannaschii

1M8Y_A

2.60

Human Pumilio 1

1MFQ_C

3.10

Human signal recognition particle 54 KDa protein

1MZP_A

2.65

50S ribosomal protein L1P from sulfolobus acidocaldaris

1OOA_A

2.45

Nuclear factor Nf-k-B P105 subunit from Mus musculus

1P6V_A

3.20

SSRA-binding protein from Aquifex aeolicus

1Q2R_A

2.90

Queuine tRNA-ribosyltransferase from Zymomonas mobilis

1QF6_A

2.90

Threonyl-tRNA synthetase from Escherichia coli

1RMV_A

2.90

Ribgrass mosaic virus coat protein

1RPU_A

2.50

Carnation italian ringspot virus 19 KDa protein

1S72_H

2.40

50S ribosomal protein L10E from Haloarcula marismortui

1SER_B

2.90

Seryl-tRNA synthetase from Thermus thermophilus

1SI2_A

2.60

50S ribosomal protein L2 from Haloarcula marismortui

1TTT_A

2.70

Elongation factor Tu (EF-Tu) from Thermus aquaticus

1U0B_B

2.30

Cysteinyl-tRNA synthetase from Escherichia coli

1URN_A

1.92

Human U1A spliceosomal protein

1UVJ_A

1.90

Bacteriophage RNA-dependent RNA polymerase

1WMQ_A

1.60

Hut operon positive regulatory protein from Bacillus subtilis

1WNE_A

3.00

Foot and mouth disease virus RNA-dependent RNA polymerase

1XMQ_B

3.00

30S ribosomal protein S2 from Thermus thermophilus

1XMQ_C

3.00

30S ribosomal protein S3 from Thermus thermophilus

1XMQ_D

3.00

30S ribosomal protein S4 from Thermus thermophilus

1XMQ_E

3.00

30S ribosomal protein S5 from Thermus thermophilus

1XMQ_F

3.00

30S ribosomal protein S6 from Thermus thermophilus

1XMQ_G

3.00

30S ribosomal protein S7 from Thermus thermophilus

1XMQ_H

3.00

30S ribosomal protein S8 from Thermus thermophilus

1XMQ_I

3.00

30S ribosomal protein S9 from Thermus thermophilus

1XMQ_J

3.00

30S ribosomal protein S10 from Thermus thermophilus

1XMQ_K

3.00

30S ribosomal protein S11 from Thermus thermophilus

1XMQ_L

3.00

30S ribosomal protein S12 from Thermus thermophilus

1XMQ_M

3.00

30S ribosomal protein S13 from Thermus thermophilus

1XMQ_N

3.00

30S ribosomal protein S14 from Thermus thermophilus

1XMQ_P

3.00

30S ribosomal protein S16 from Thermus thermophilus

1XMQ_Q

3.00

30S ribosomal protein S17 from Thermus thermophilus

1XMQ_R

3.00

30S ribosomal protein S18 from Thermus thermophilus

1XMQ_S

3.00

30S ribosomal protein S19 from Thermus thermophilus

1XMQ_T

3.00

30S ribosomal protein S20 from Thermus thermophilus

1XMQ_V

3.00

30S ribosomal protein Thx from Thermus thermophilus

1XOK_C

3.00

Alfalfa mosaic virus coat protein

1XOK_D

3.00

Alfalfa mosaic virus coat protein

1YTU_A

2.50

Hypothetical protein Af1318 from Archaeoglobus fulgidus

1YVP_A

2.20

Xenopus laevis 60 KDa Ss-A/Ro ribonucleoprotein

1ZE2_A

3.00

tRNA pseudouridine synthase B from Thermotoga maritima

1ZE2_B

3.00

tRNA pseudouridine synthase B from Thermotoga maritima

1ZJW_A

2.50

Glutamyl-tRNA synthetase from Escherichia coli

2A8V_A

2.40

E. coli Rho transcription termination factor RNA-binding domain

2BBV_F

2.80

Black beetle virus capsid protein

2BH2_A

2.15

E. coli 23S rRNA uracil-5-methyltransferase Ruma