Supplementary Table 2. List of the 107 protein sequences in the PRINR25 dataset for prediction of
RNA-binding residues.
|
PDB ID chain |
Structure resolution (Å) |
Sequence annotation |
|
1A1V_A |
2.20 |
Hepatitis C virus Ns3 helicase |
|
1A34_A |
1.81 |
Satellite tobacco mosaic virus protein |
|
1A9N_A |
2.38 |
Human U2 A' |
|
1APG_A |
3.00 |
Ricin from Ricinus communis |
|
1AQ3_A |
2.80 |
Bacteriophage ms2 coat protein |
|
1ASY_A |
3.00 |
Aspartyl tRNA synthetase from Saccharomyces cerevisiae |
|
1BMV_2 |
3.00 |
Bean pod mottle virus protein |
|
1C0A_A |
2.40 |
E. coli aspartyl tRNA synthetase |
|
1C9S_L |
1.90 |
Trp RNA-binding attenuation protein from Bacillus stearothermophilus |
|
1CVJ_A |
2.60 |
Human polyadenylate binding protein 1 |
|
1CWP_A |
3.20 |
Cowpea chlorotic mottle virus coat protein |
|
1DDL_A |
2.70 |
Desmodium yellow mottle virus protein |
|
1DFU_P |
1.80 |
E. coli ribosomal protein L25 |
|
1DI2_A |
1.90 |
Xenopus laevis double stranded RNA binding protein A |
|
1E7K_A |
2.90 |
Human 15.5 KDa RNA binding protein (Nhp2/Rs6 family) |
|
1E8O_A |
3.20 |
Human signal recognition particle 9 Kda protein |
|
1E8O_B |
3.20 |
Human signal recognition particle 14 Kda protein |
|
1EC6_A |
2.40 |
Human RNA-binding protein Nova-2 |
|
1F8V_E |
3.00 |
Pariacoto virus mature capsid protein |
|
1FFY_A |
2.20 |
Isoleucyl-tRNA synthetase from Staphylococcus aureus |
|
1FKA_O |
3.30 |
30S ribosomal protein S15 from Thermotoga maritima |
|
1G59_A |
2.40 |
Glutamyl-tRNA synthetase from Thermus thermophilus |
|
1GAX_A |
2.90 |
Valyl-tRNA synthetase from Thermus thermophilus |
|
1H38_A |
2.90 |
Bacteriophage T7 RNA polymerase |
|
1HC8_A |
2.80 |
Ribosomal protein L11 from Bacillus stearothermophilus |
|
1HQ1_A |
1.52 |
E. coli signal recognition particle protein |
|
1I5L_A |
2.75 |
SNRNP Sm-like protein Af-Sm1 from Archaeoglobus fulgidus |
|
1I6U_A |
2.60 |
30S ribosomal protein S8P from Methanococcus jannaschii |
|
1JBR_A |
2.15 |
Restrictocin (ribonuclease) from Aspergillus restrictus |
|
1JID_A |
1.80 |
Human signal recognition particle 19 Kda protein |
|
1JJ2_1 |
2.40 |
50S ribosomal protein L39E from Haloarcula marismortui |
|
1JJ2_2 |
2.40 |
50S ribosomal protein L44E from Haloarcula marismortui |
|
1JJ2_A |
2.40 |
50S ribosomal protein L2 from Haloarcula marismortui |
|
1JJ2_B |
2.40 |
50S ribosomal protein L3 from Haloarcula marismortui |
|
1JJ2_C |
2.40 |
50S ribosomal protein L4 from Haloarcula marismortui |
|
1JJ2_D |
2.40 |
50S ribosomal protein L5 from Haloarcula marismortui |
|
1JJ2_E |
2.40 |
50S ribosomal protein L6 from Haloarcula marismortui |
|
1JJ2_G |
2.40 |
50S ribosomal protein L10 from Haloarcula marismortui |
|
1JJ2_I |
2.40 |
50S ribosomal protein L13 from Haloarcula marismortui |
|
1JJ2_J |
2.40 |
50S ribosomal protein L14 from Haloarcula marismortui |
|
1JJ2_K |
2.40 |
50S ribosomal protein L15 from Haloarcula marismortui |
|
1JJ2_L |
2.40 |
50S ribosomal protein L15E from Haloarcula marismortui |
|
1JJ2_M |
2.40 |
50S ribosomal protein L18 from Haloarcula marismortui |
|
1JJ2_N |
2.40 |
50S ribosomal protein L18E from Haloarcula marismortui |
|
1JJ2_O |
2.40 |
50S ribosomal protein L19E from Haloarcula marismortui |
|
1JJ2_P |
2.40 |
50S ribosomal protein L21E from Haloarcula marismortui |
|
1JJ2_Q |
2.40 |
50S ribosomal protein L22 from Haloarcula marismortui |
|
1JJ2_R |
2.40 |
50S ribosomal protein L23 from Haloarcula marismortui |
|
1JJ2_S |
2.40 |
50S ribosomal protein L24 from Haloarcula marismortui |
|
1JJ2_T |
2.40 |
50S ribosomal protein L24E from Haloarcula marismortui |
|
1JJ2_U |
2.40 |
50S ribosomal protein L29 from Haloarcula marismortui |
|
1JJ2_V |
2.40 |
50S ribosomal protein L30 from Haloarcula marismortui |
|
1JJ2_W |
2.40 |
50S ribosomal protein L31E from Haloarcula marismortui |
|
1JJ2_X |
2.40 |
50S ribosomal protein L32E from Haloarcula marismortui |
|
1JJ2_Y |
2.40 |
50S ribosomal protein L37Ae from Haloarcula marismortui |
|
1JJ2_Z |
2.40 |
50S ribosomal protein L37E from Haloarcula marismortui |
|
1K8W_A |
1.85 |
E. coli tRNA pseudouridine synthase B |
|
1KNZ_A |
2.45 |
Simian 11 rotavirus nonstructural RNA-binding protein 34 |
|
1KOG_A |
3.50 |
E. coli threonyl-tRNA synthetase |
|
1L9A_A |
2.90 |
Signal recognition particle 19 KDa protein from Methanococcus jannaschii |
|
1M8Y_A |
2.60 |
Human Pumilio 1 |
|
1MFQ_C |
3.10 |
Human signal recognition particle 54 KDa protein |
|
1MZP_A |
2.65 |
50S ribosomal protein L1P from sulfolobus acidocaldaris |
|
1OOA_A |
2.45 |
Nuclear factor Nf-k-B P105 subunit from Mus musculus |
|
1P6V_A |
3.20 |
SSRA-binding protein from Aquifex aeolicus |
|
1Q2R_A |
2.90 |
Queuine tRNA-ribosyltransferase from Zymomonas mobilis |
|
1QF6_A |
2.90 |
Threonyl-tRNA synthetase from Escherichia coli |
|
1RMV_A |
2.90 |
Ribgrass mosaic virus coat protein |
|
1RPU_A |
2.50 |
Carnation italian ringspot virus 19 KDa protein |
|
1S72_H |
2.40 |
50S ribosomal protein L10E from Haloarcula marismortui |
|
1SER_B |
2.90 |
Seryl-tRNA synthetase from Thermus thermophilus |
|
1SI2_A |
2.60 |
50S ribosomal protein L2 from Haloarcula marismortui |
|
1TTT_A |
2.70 |
Elongation factor Tu (EF-Tu) from Thermus aquaticus |
|
1U0B_B |
2.30 |
Cysteinyl-tRNA synthetase from Escherichia coli |
|
1URN_A |
1.92 |
Human U1A spliceosomal protein |
|
1UVJ_A |
1.90 |
Bacteriophage RNA-dependent RNA polymerase |
|
1WMQ_A |
1.60 |
Hut operon positive regulatory protein from Bacillus subtilis |
|
1WNE_A |
3.00 |
Foot and mouth disease virus RNA-dependent RNA polymerase |
|
1XMQ_B |
3.00 |
30S ribosomal protein S2 from Thermus thermophilus |
|
1XMQ_C |
3.00 |
30S ribosomal protein S3 from Thermus thermophilus |
|
1XMQ_D |
3.00 |
30S ribosomal protein S4 from Thermus thermophilus |
|
1XMQ_E |
3.00 |
30S ribosomal protein S5 from Thermus thermophilus |
|
1XMQ_F |
3.00 |
30S ribosomal protein S6 from Thermus thermophilus |
|
1XMQ_G |
3.00 |
30S ribosomal protein S7 from Thermus thermophilus |
|
1XMQ_H |
3.00 |
30S ribosomal protein S8 from Thermus thermophilus |
|
1XMQ_I |
3.00 |
30S ribosomal protein S9 from Thermus thermophilus |
|
1XMQ_J |
3.00 |
30S ribosomal protein S10 from Thermus thermophilus |
|
1XMQ_K |
3.00 |
30S ribosomal protein S11 from Thermus thermophilus |
|
1XMQ_L |
3.00 |
30S ribosomal protein S12 from Thermus thermophilus |
|
1XMQ_M |
3.00 |
30S ribosomal protein S13 from Thermus thermophilus |
|
1XMQ_N |
3.00 |
30S ribosomal protein S14 from Thermus thermophilus |
|
1XMQ_P |
3.00 |
30S ribosomal protein S16 from Thermus thermophilus |
|
1XMQ_Q |
3.00 |
30S ribosomal protein S17 from Thermus thermophilus |
|
1XMQ_R |
3.00 |
30S ribosomal protein S18 from Thermus thermophilus |
|
1XMQ_S |
3.00 |
30S ribosomal protein S19 from Thermus thermophilus |
|
1XMQ_T |
3.00 |
30S ribosomal protein S20 from Thermus thermophilus |
|
1XMQ_V |
3.00 |
30S ribosomal protein Thx from Thermus thermophilus |
|
1XOK_C |
3.00 |
Alfalfa mosaic virus coat protein |
|
1XOK_D |
3.00 |
Alfalfa mosaic virus coat protein |
|
1YTU_A |
2.50 |
Hypothetical protein Af1318 from Archaeoglobus fulgidus |
|
1YVP_A |
2.20 |
Xenopus laevis 60 KDa Ss-A/Ro ribonucleoprotein |
|
1ZE2_A |
3.00 |
tRNA pseudouridine synthase B from Thermotoga maritima |
|
1ZE2_B |
3.00 |
tRNA pseudouridine synthase B from Thermotoga maritima |
|
1ZJW_A |
2.50 |
Glutamyl-tRNA synthetase from Escherichia coli |
|
2A8V_A |
2.40 |
E. coli Rho transcription termination factor RNA-binding domain |
|
2BBV_F |
2.80 |
Black beetle virus capsid protein |
|
2BH2_A |
2.15 |
E. coli 23S rRNA uracil-5-methyltransferase Ruma |